5ifDdZddlmZmZmZmZddlmZdZdZ dZ dZ y ) z bash templating code )print_functionunicode_literalsdivisionabsolute_import)fillcyNbashr v/home/marpiech/ifpan-abm-pgxpred/analysis/marpiech-gwas-test/venv/lib/python3.12/site-packages/dxpy/templating/bash.pyget_interpreterr r cyr r r r rget_pathrrr c6d|zdz|zdz|zdz|zdzS)Nz for i in "${!z([@]}"; do dx-jobutil-add-output z "${z[$i]}" --class=z doner )output_param_nameoutput_param_classs rget_array_output_strrsW !2 25` `ct tw} }AR RUf fi{ {~J JJr c ld}d}d} d} d|vrc|dr^ddj|dD cgc]:} dj| d| djdr d| dzd zn| d <c} zdz}|s|s|s|rdtd d d d zdz}|r2|dj|D cgc]} dj| c} z }|r5|dj|D cgc]} dj| c} dzz }|s|r5|dj||zD cgc]} dj| c} z }|rS|dk7rdnd} | tdd d d dzz } | dj|D cgc]} dj| c} dzz } d|vrq|drldtdd d d zdz} | dj|dD cgc]5} d| dvrd| dzdz| dzdz| dznt | d| d7c} z } nd|vrdtdd d d z} d||| | fScc} wcc} wcc} wcc} wcc} wcc} w)N inputSpec z$ echo "Value of {name}: '${var}'"nameclasszarray:{z[@]})rvarzThe following line(s) use the dx command-line tool to download your file inputs to the local file system using variable names for the filenames. To recover the original filenames, you can use the output of "dx describe "$variable" --name".z # P)initial_indentsubsequent_indentwidthz z$ dx download "${name}" -o {name} )rzO if [ -n "${name}" ] then dx download "${name}" -o {name} fiz` for i in ${{!{name}[@]}} do dx download "${{{name}[$i]}}" -o {name}-$i done aIThe following line(s) use the dx command-line tool to upload your file outputs after you have created them on the local file system. It assumes that you have used the output field name for the filename for each output, but you can change that behavior to suit your needs. Run "dx upload -h" to see more options to set metadata.z& {name}=$(dx upload {name} --brief) outputSpeczThe following line(s) use the utility dx-jobutil-add-output to format and add output variables to your job's output as appropriate for the output class. Run "dx-jobutil-add-output -h" for more information on what it does.arrayz dx-jobutil-add-output z "$z " --class=a{No output spec is specified, but if you would like to add output fields, you can add invocations of the dx-jobutil-add-output utility to format and add values to the job_output.json file. For example, "dx-jobutil-add-output keyname 32" will add an output field called "keyname" with value equal to the number 32. Run "dx-jobutil-add-output -h" for more details on what it does.)joinformat startswithrr)app_jsonrequired_file_input_namesoptional_file_input_namesrequired_file_array_input_namesoptional_file_array_input_namesfile_output_namesdummy_output_hashinit_inputs_str dl_files_str ul_files_str outputs_str input_paramr output_params r get_stringsr5"sOLLKh8K#8|DEP|Q,Rmx,T,[,[almsatdopwdxdCdCDLdM|CNOUCV}VY_}_S^_eSf,[-h,R"SSVZZ $=&*Id$b4 >L $ DII)B'C!%(  &d& ('CDGKK KL +.M DII#BDc"c 'e ( FF ('ef fL ."4t" m,4XZ\^de e  j{"|bf#K#R#RX\#R#]"|}AEE E xH\$:T#F+3hVXZZ]cc  tyy6>|6L"N&2`go{|CoD`D">fAU"UX]"]`lms`t"txD#DGST[G\#\';Lr9s,"SR!J9Hr