5i:ddlZddlmZmZddlZddlZddlZdZy)N)err_exitResourceNotFoundc,tj|}g} ttjj ||d5} t j| } dddtj ||dtjdd ||dg} t j| } g} |D]I}| j|}|| j|(|jd|j|K| r|dzt| z}t!||S#1swYxYw#t$rYttjj ||d5} t j| } dddn #1swYnxYwYwxYw)zV A function for determining appropriate geno bins to attach to a given filter rNregiondxcatstrandz: )dxpydescribeopenospathjoinjsonloadr subprocess check_outputloadsgetappendpopstrr) list_of_genesprojectgenome_referenceextract_utils_basepath stage_file platform_file error_message project_descgeno_positionsgeno_bin_manifestr geno_binsgeno_bins_json invalid_genesgenebins /home/marpiech/ifpan-abm-pgxpred/analysis/marpiech-gwas-test/venv/lib/python3.12/site-packages/dxpy/dx_extract_utils/retrieve_bins.py retrieve_binsr+s ==)LN-  GGLL&      -  +,A  - a(),x*@AB'' ua(),x*@ABIZZ *NM'  & ;   & GGH   ! !# & '%,s=/AA  G - - -  GGLL&      -  +,A  - - --sA*D1D%&D1%D.*D113F$F: FF FF)r exceptionsrrrr rr+r*r/s 3 ,r.