5iTddlmZddlZddlZddlZddlZddlmZddedfdZddZ y) ) annotationsN)err_exitTctjdk(}tj} tjj dk(} tjj dk(} |rd} t |ts:|dn1|r-|dk(rd} n'|dk(rd } n|rd } n|d j|nd} |r |d k(rd } nId} |}nDtj}| |dn%d} tjj|| z} dk(rtjj|rltjj|r|dj|tjj|r|dj||rF| d k(r t|y| dk(r't!|d5}|j#|dddy|dy|r|n|dj%t'fd|Ds|d| s|rdnd}| rdnd}|r t|nd}t(j*}d}d|i}| r||d<|| ||d}| dk(rMt!|fi|5}t)j,|fi|}|j/|j1|dddy| d k(rFt)j,tj2fi|}|j/|j1|y|dy#1swYyxYw#1swYyxYw)aj arg_output: str A string representing the output file path. When it's "-", output is written to stdout. This can be directly set as args.output from argparse when calling the function (e.g within dataset_utilities) arg_delim: str A string representing the delimiter. Defaults to "," when not specified. It also determines the file suffix when writing to file. This can be set to args.delimiter from argparse when the method is called arg_sql: bool A boolean representing whether the output_listdict_or_string is a SQL query (string) or not. This can be args.sql from argparse output_listdict_or_string: 'list of dicts' or 'str' depending on whether arg_sql is False or True, respectively This is expected to be the response from vizserver if arg_sql is True, this is expected to be a string representing the SQL query if arg_sql is False, this is expected to be a list of dicts representing the output of a SQL query if output_listdict_or_string is a list of dicts, all dicts must have the same keys which will be used as column names save_uncommon_delim_to_txt: bool Set this to False if you want to error out when any delimiter other than "," or " " is specified output_file_name: str This is expected to be a record_name which will be used when arg_output is not specified Do not append a suffix to this string output_file_name is mandatory when arg_output is not specified By default delimiter is set "," and file suffix is csv (when writing to file) None values are written as empty strings by default (csv.DictWriter behavior) ntrz.sqlz!Expected SQL query to be a string,z.csv z.tsvz.txtzUnsupported delimiter: {}-STDOUTFILENzNo output filename specifiedz1{} already exists. Please specify a new file pathz1{} is a directory. Please specify a new file pathwz8Unexpected error occurred while writing SQL query outputrc3hK|])}t|jtk(+yw)N)setkeys).0i COLUMN_NAMESs z/home/marpiech/ifpan-abm-pgxpred/analysis/marpiech-gwas-test/venv/lib/python3.12/site-packages/dxpy/cli/output_handling.py z*write_expression_output..~s* 34CMS. . s/2z(All rows must have the same column nameswb"modenewline) fieldnames delimiterlineterminatorquoting quotecharz.Unexpected error occurred while writing output)osnamelinesepsys version_infomajor isinstancestrformatgetcwdpathjoinexistsisfileisdirprintopenwriterallcsv QUOTE_MINIMAL DictWriter writeheader writerowsstdout) arg_output arg_delimarg_sqloutput_listdict_or_stringsave_uncommon_delim_to_txtoutput_file_name error_handlercolnames IS_OS_WINDOWSOS_SPECIFIC_LINE_SEPARATOR IS_PYTHON_2 IS_PYTHON_3SUFFIX WRITE_METHOD OUTPUT_DIRf WRITE_MODENEWLINE DELIMITERQUOTING QUOTE_CHAR write_argsdictwriter_paramsrrs @rwrite_expression_outputrQ sZGGtOM!#""((A-K""((A-K3S9 = >   F $ F)9@@KL  #L!L) YY[  # .  "L!ww||J8H68QR v 77>>* +ww~~./GNN( ww}}-.GNN(  8 # + , V #&, 312 3 3 T U #L4Q7<<>L 8Q   D E(MTs #"&/C NS ##  J  $+Jy !'"8#   6 !&5*5 7NN1:(9:  56 7 7 X %szz?->?A MMO KK1 2 J Kc 3 3L 7 7s4K48L4K=L ct|trtj|dd}|St dt j y)zPretty-prints the provided JSON object. Args: json_dict: A string containing valid JSON data. Returns: Returns a string with formatted JSON or None if there's an error. T) sort_keysindentzWARNING: Invalid JSON provided.)fileN)r'dictjsondumpsr0r$stderr) json_dictformatted_jsons rpretty_print_jsonr]s8)T"IaH /cjjA)r[rWreturnr() __future__rr$r4r!rX exceptionsrrQr]r^rrcs2" ! $ [L~r^