5382 du -h --max-depth=1 Pictures/ 5383 du -h --max-depth=0 Pictures/ 5384 du -h --max-depth=0 Pictures/archiwum/ 5385 ls Pictures/archiwum/ 5386 ls /media/marpiech/Seagate\ Backup\ Plus\ Drive/Pictures/ 5387 ls -latr /media/marpiech/Seagate\ Backup\ Plus\ Drive/Pictures/ 5388 cp -r /media/marpiech/Seagate\ Backup\ Plus\ Drive/Pictures . 5389 find Pictures/ -name SAM_6244.JPG 5390 ls Pictures/2010-01/ 5391 find Pictures/ -name IMG_6724.JPG 5392 exiftool ~/Pictures/2013-12-07/IMG_6724.JPG | grep -E "Date.*Created|Create Date|Date/Time Original" 5393 identify -verbose ~/Pictures/2013-12-07/IMG_6724.JPG | grep -E "date:create|exif:DateTime" 5394 sudo apt update && sudo apt install -y libimage-exiftool-perl 5395 exiftool ~/Pictures/2013-12-07/IMG_6724.JPG | grep -E "Date.*Created|Create Date|Date/Time Original" 5396 exiftool Pictures/2013-12-07/IMG_6724.JPG | grep -E "Date.*Created|Create Date|Date/Time Original" 5397 ls -latr 5398 immich upload --recursive Pictures 2>&1 | tee immich-upload.log 5399 htop 5400 mdkir -p resources/test/data 5401 mkdir -p resources/test/data 5402 gcloud auth 5403 gcloud auth list 5404 gcloud config set account piechota@intelliseq.pl 5405 cd resources/test/data/ 5406 gsutil cp gs://iseq-test-workdir2/demo/sample_small_R* . 5407 cd ../../.. 5408 cat api-wdl/src/main/resources/application.properties 5409 cat api-wdl/src/main/resources/application-staging.properties 5410 cat intelliseeds/files/api-wdl-app.properties 5411 locate flowenv 5412 cat /home/marpiech/projects/iseq/genetraps/cromwell/flowenv 5413 cat /home/marpiech/projects/iseq/genetraps/cromwell/flowenv | grep gitlab 5414 cat /home/marpiech/projects/iseq/genetraps/cromwell/flowenv | grep onprem 5415 grep -ri gitlab 5416 grep -ri gitlab | grep wdl 5417 v 5418 curl https://workflows.intelliseq.com/intelliseq/wdl_minimal/-/raw/test_minimal/meta.json?TOKEN=1234 5419 cd .. 5420 git clone git@github.com:intelliseq/flow.git 5421 cd flow/ 5422 python3 -m venv venv 5423 nano .gitignore 5424 source venv/bin/activate 5425 infisical init 5426 ls -latr 5427 cd .. 5428 ls 5429 cd gcsbatch-nf-setup/ 5430 cat README.md 5431 gsutil ls gs://iseq-test/samples/7f3049d0-11ee-4247-8b96-d0aee4c57900 5432 ls 5433 ls infra/ 5434 cd .. 5435 cp -r gcsbatch-nf-setup genetraps 5436 ls 5437 cp -r nf-wdl-gcp-test genetraps 5438 claude 5439 sudo apt-get update && sudo apt-get install infisical 5440 cd ~ 5441 grep -r hulud . 5442 dx ls /results/pheno/applets-resources 5443 git pull 5444 git push 5445 nano ./manhattan.sh 5446 dx ls /results/pheno/applets-resources/ 5447 nano ./manhattan.sh 5448 dx download /results/pheno/applets-resources/prescription_phenotypes-columns.csv -f 5449 source venv/bin/activate 5450 dx download /results/pheno/applets-resources/prescription_phenotypes-columns.csv -f 5451 cat prescription_phenotypes-columns.csv | grep simvastatine 5452 cat prescription_phenotypes-columns.csv | grep simvas 5453 cat prescription_phenotypes-columns.csv | grep longest_therapy_duration | grep -v box_cox | cut -d '_' -f 1 | head 5454 cat prescription_phenotypes-columns.csv | grep longest_therapy_duration | grep -v box_cox | cut -d '_' -f 1 | wc -l 5455 cat prescription_phenotypes-columns.csv | grep longest_therapy_duration | grep -v box_cox | cut -d '_' -f 1 | paste __longest_therapy_duration | head 5456 cat prescription_phenotypes-columns.csv | grep longest_therapy_duration | grep -v box_cox | cut -d '_' -f 1 | sed -n 's/$/__longest_therapy_duration' | head 5457 cat prescription_phenotypes-columns.csv | grep longest_therapy_duration | grep -v box_cox | cut -d '_' -f 1 | sed -n 's/$/__longest_therapy_duration/' | head 5458 cat prescription_phenotypes-columns.csv | grep longest_therapy_duration | grep -v box_cox | cut -d '_' -f 1 | sed -n s/$/__longest_therapy_duration/ | head 5459 cat prescription_phenotypes-columns.csv | grep longest_therapy_duration | grep -v box_cox | head 5460 rm -r runid* 5461 rm covar* 5462 history | grep xargs 5463 cat prescription_phenotypes-columns.csv | grep longest_therapy_duration | grep -v box_cox | xargs -n 2 -i bash -c './manhattan.sh --phenotype {} & sleep 90'; cat prescription_phenotypes-columns.csv | grep longest_therapy_duration | grep -v box_cox | head | xargs -n 2 -i bash -c './manhattan.sh --phenotype {} --method ldak & sleep 90'; 5464 cat prescription_phenotypes-columns.csv | grep longest_therapy_duration | grep -v box_cox | xargs -i bash -c './manhattan.sh --phenotype {} & sleep 90'; cat prescription_phenotypes-columns.csv | grep longest_therapy_duration | grep -v box_cox | head | xargs -i bash -c './manhattan.sh --phenotype {} --method ldak & sleep 90'; 5465 cat prescription_phenotypes-columns.csv | grep dos | head 5466 cat prescription_phenotypes-columns.csv | grep timolol 5467 cat prescription_phenotypes-columns.csv | grep optimal_dose 5468 cat prescription_phenotypes-columns.csv | grep optimal_dose | grep -v box_cox | head -40 | xargs -n 2 -i bash -c './manhattan.sh --phenotype {} & ./manhattan.sh --phenotype {} --method ldak & sleep 30' 5469 cat prescription_phenotypes-columns.csv | grep warfarin 5470 cat prescription_phenotypes-columns.csv | grep -P amiptryptiline|warfarin 5471 cat prescription_phenotypes-columns.csv | grep -P "amiptryptiline|warfarin" 5472 cat prescription_phenotypes-columns.csv | grep -P "amitryptiline|warfarin" 5473 cat prescription_phenotypes-columns.csv | grep -P "amitryp|warfarin" 5474 cat prescription_phenotypes-columns.csv | grep -P "amitri|warfarin" 5475 cat prescription_phenotypes-columns.csv | grep -P "amitri|warfarin | xargs -n 2 -i bash -c './manhattan.sh --phenotype {} & ./manhattan.sh --phenotype {} --method ldak & sleep 30' 5476 cat prescription_phenotypes-columns.csv | grep -P "amitri|warfarin" | xargs -n 2 -i bash -c './manhattan.sh --phenotype {} & ./manhattan.sh --phenotype {} --method ldak & sleep 30' 5477 nano manhattan.sh 5478 dx ls 5479 dx ls workflows/ 5480 cat prescription_phenotypes-columns.csv | grep -P "amitri|warfarin" | xargs -n 2 -i bash -c './manhattan.sh --phenotype {} & sleep 30' 5481 history | tail -100 > runs.txt