runid/
result/
covar/
logs/
logs_qc/
venv
*.png
*.csv
*.log
progress.txt
qc_progress.txt
.progress.lock
.qc_progress.lock
gwas_analysis_summary.tsv
gwas_analysis_summary.tsv.bak*
*_regenie_dosages.tsv
contingency_*.tsv
filtered/
*.bak
*.bak.*